Media 000363027: Anterior Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
mvz:amphibian and reptile specimens:129400 Onychodactylus japonicus
Managed by
Carol Spencer

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Media produced from the same original imaging that created Media 000363027 (this media). Includes all media associated with this media through an imaging and processing workflow.

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· Public

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GENERAL DETAILS Field Definitions

Media ID
000363027
Media type
Volumetric Image Series
Object element or part
anterior body
Object represented
mvz:amphibian and reptile specimens:129400
Object taxonomy
Onychodactylus japonicus
Object organization
Museum of Vertebrate Zoology (MVZ) Herp Collection (Arctos)
Side
--
Orientation
--
Short description
HRXCT scan - anterior body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1558 Cannatella: onychodactylus: Scans of the head and shoulders of a whole preserved Onychodactylus japonicus (MVZ 129400) for David Cannatella of The University of Texas at Austin, Biology Department. Specimen scanned by Matthew Colbert 19 December 2006. Images flipped. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.13 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.0313 mm), S.O.D. 45 mm, 1600 views, 3 samples per view, inter-slice spacing 2 lines (= 0.0313 mm), field of reconstruction 14.5 mm (maximum field of view 14.88 mm), reconstruction offset 7000, reconstruction scale 5500. Acquired with 19 slices per rotation and 15 slices per set. Flash and ring-removal processing done by Alison Mote based on correction of raw sinogram data using IDL routines “RK_SinoDeSpike” and “RK_SinoRingProcSimul,” both with default parameters. Reconstructed with an angle of 3.5 degrees. Last four duplicate slices of each set deleted. Rotation correction processing done by Alison Mote based on IDL routine “DoRotationCorrection.” Total final slices = 930.
Creator
--
Date created
December 19, 2006
Date uploaded
May 10, 2021

FILE OBJECT DETAILS Field Definitions

File name
MVZ_129400.zip
File format(s)
ZIP archive, TIFF
File size
2.21 GB
Image width
804
Image height
718
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.014200
Y pixel spacing
0.014200
Z pixel spacing
0.031300
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
930

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Carol Spencer
Data uploaded by
Jessie Maisano
Publication status
Restricted Download
Download reviewer
Carol Spencer; Jessie Maisano; Carla Cicero; Museum of Vertebrate Zoology
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
 In Copyright - Educational Use Permitted
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
EF-0334952, DBI-1902242
Publisher
oUTCT PEN
Cite as
David Cannatella provided access to these data, with data collection funded by NSF EF-0334952 and data upload to MorphoSource funded by DBI-1902242.
Media preview mode
Interactive/Embeddable
Additional usage agreement
 https://mvz.berkeley.edu/mvzdata_terms/

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/363027
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mvz:amphibian and reptile specimens:129400 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
December 19, 2006
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
3
Projections
1600
Voltage
180
Power
--
Amperage
130
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000363027: Anterior Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
May 10, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000363027: Anterior Body [CTImageSeries] [CT] (this media)