Media 000363043: Anterior Body
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000363043: Anterior Body
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
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TAGS
GENERAL DETAILS Field Definitions
Media ID
000363043
Media type
Volumetric Image Series
Object element or part
anterior body
Object represented
Object taxonomy
Chiropterotriton magnipes
Object organization
Side
--
Orientation
--
Short description
HRXCT scan - anterior body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1627
Cannatella:
cmagn: Scans of the head and forearms of Chiropterotriton magnipes (MVZ 163964) for David Cannatella of the University of Texas at Austin, Department of Biology. Specimen scanned by Matthew Colbert 12 March 2007. Images flipped.
16bit: 1024x1024 16-bit TIFF images. II, 200 kV, 0.12 mA, intensity control on, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.03197 mm), S.O.D. 46 mm, 1400 views, 3 samples per view, inter-slice spacing 2 lines (= 0.03197 mm), field of reconstruction 13.5 mm (maximum field of view 15.23742 mm), reconstruction offset 5500, scanner scale 7000, reconstruction scale 6000. Acquired with 19 slices per rotation and 15 slices per set. Drift and ring-removal processing done by Alison Mote based on correction of raw sinogram data using IDL routines “RK_SinoDeDrift” with parameters “goodfile=180, /hi50, /despike” and “RK_SinoRingProcSimul” with parameters “binwidth=21, bestof5=11.” Reconstructed with an angle of 15 degrees. Deleted last duplicate slice of each rotation and first three duplicate slices of each rotation. Total final slices = 840.
Creator
--
Date created
March 12, 2007
Date uploaded
May 10, 2021
FILE OBJECT DETAILS Field Definitions
File name
MVZ_163964.zip
File format(s)
ZIP archive, TIFF
File size
2.09 GB
Image width
938
Image height
714
Color space
BlackIsZero
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.013180
Y pixel spacing
0.013180
Z pixel spacing
0.031970
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
840
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
EF-0334952, DBI-1902242
Publisher
oUTCT PEN
Cite as
David Cannatella provided access to these data, with data collection funded by NSF EF-0334952 and data upload to MorphoSource funded by DBI-1902242.
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
mvz:amphibian and reptile specimens:163964
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
March 12, 2007
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
3
Projections
1400
Voltage
200
Power
--
Amperage
120
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000363043: Anterior Body [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
May 10, 2021
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000363043: Anterior Body [CTImageSeries] [CT] (this media)