Media 000387324: Day 12 Embryo In Egg
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000387324: Day 12 Embryo In Egg
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000387324
Media type
Volumetric Image Series
Object element or part
day 12 embryo in egg
Object represented
Object taxonomy
Gallus gallus
Object organization
Side
--
Orientation
--
Short description
--
Full description
University of Texas High-Resolution X-ray CT Facility Archive 0895
Rowe:
Gallus/d12_: Scans of an egg of Gallus gallus (12new; frozen, one of chicken egg series at day 12 after laying) for Dr. Timothy Rowe of the Department of Geological Sciences, The University of Texas at Austin, and Digimorph. Specimen scanned by Matthew Colbert 5 August 2003.
16bitrf: 1024x1024 16-bit TIFF images. II, 120 kV, 0.2 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.103 mm), S.O.D. 150 mm, 1600 views, 3 samples per view, inter-slice spacing 2 lines (= 0.103 mm), field of reconstruction 46 mm (maximum field of view 49.10749 mm), reconstruction offset 4300, reconstruction scale 1500. Reconstructed off-center: x = 0.3, y = -0.7. Acquired with 15 slices per rotation. Drift- and ring-removal processing done by Rachel Racicot based on correction of raw sinogram data using IDL routines “RK_SinoDeDrift” with default parameters, and “RK_SinoRingProcSimul”, with parameters “BINWIDTH=21” and “BESTOF5”. Total slices = 585.
Creator
Matthew Colbert
Date created
August 05, 2003
Date uploaded
September 29, 2021
FILE OBJECT DETAILS Field Definitions
File name
16bitrf.zip
File format(s)
ZIP archive, TIFF
File size
779 MB
Image width
1024
Image height
1024
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.045000
Y pixel spacing
0.045000
Z pixel spacing
0.103000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
585
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Texas Memorial Museum
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
IIS-0208675, DBI-1902242
Publisher
oUTCT PEN
Cite as
oUTCT provided access to these data, with data collection funded by NSF IIS-0208675 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
tmm:vpl:uncatalogued
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
August 05, 2003
Software
--
Description
day 12 embryo in egg
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
3
Projections
1600
Voltage
120
Power
--
Amperage
200
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000387324: Day 12 Embryo In Egg [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000387324: Day 12 Embryo In Egg [CTImageSeries] [CT] (this media)