Media 000399624: Dissected Vertebral Column, Trunk Section (Micro)
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Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
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GENERAL DETAILS Field Definitions

Media ID
000399624
Media type
Volumetric Image Series
Object element or part
Dissected vertebral column, trunk section (micro)
Object represented
Object taxonomy
Squalus acanthias
Object organization
Side
--
Orientation
--
Short description
Dissected vertebral column, trunk section (micro)
Full description
This scan includes the vertebral column from the trunk region dissected out from the body. Vertebrae are from the body region approximately between the pectoral girdle and dorsal fin. The scan includes four whole vertebrae.
Creator
3D Anatomy Studios
Date created
September 15, 2021
Date uploaded
December 01, 2021

FILE OBJECT DETAILS Field Definitions

File name
Dogfish_vertebral_column_26um_1008.zip
File format(s)
ZIP archive, BMP
File size
334 MB
Image width
808
Image height
808
Color space
--
Color depth
8
Compression
BI_RGB; 0; None
Series type
Reconstructed image stack
X pixel spacing
0.026100
Y pixel spacing
0.026100
Z pixel spacing
0.026100
Pixel spacing units
Mm
Slice thickness
0.0261
Number of images in set
1,506

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1276, Keck XROMM Core Facility (Brown University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
We thank the Keck XROMM Core Facility (Brown University) for their donation of scanning time.
Publisher
3D Anatomy Studios
Cite as
3D Anatomy Studios (2021). CT scan of a spiny dogfish shark (Squalus acanthias) purchased from Carolina Biological Supply, ID 3DAS-ID00002 (published BMP files). Retrieved from MorphoSource ARK: [Insert ARK link].
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object 3DAS:00002 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1276
Device facility
Keck XROMM Core Facility (Brown University)
Creator
3D Anatomy Studios
Event date
September 15, 2021
Software
Skyscan v1.5
Description
--
Description attachment
None
Reference attachment
None
Exposure time
262
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
ON (2)
Projections
259
Voltage
60
Power
--
Amperage
200
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
1008
Detector pixels size X
26100
Detector pixels Y
672
Detector pixels size Y
26100
Detector configuration
--
Source object distance
59.572
Source detector distance
159.149
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000399624: Dissected Vertebral Column, Trunk Section (Micro) [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
3D Anatomy Studios
Event date
September 15, 2021
Software
SkyScan v1.5
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000399624: Dissected Vertebral Column, Trunk Section (Micro) [CTImageSeries] [CT] (this media)