Media 000414454: Navicular
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000414454: Navicular
Open Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
Project
· Public
Team
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000414454
Media type
Mesh
Object element or part
navicular
Object represented
Object taxonomy
Callithrix jacchus
Object organization
Side
Right
Orientation
--
Short description
--
Full description
--
Creator
doug boyer
Date created
January 16, 2022
Date uploaded
January 16, 2022
FILE OBJECT DETAILS Field Definitions
File name
AMNH_200525_Callthrix_nav.ply
File format(s)
PLY
File size
4.88 MB
Points
73313
Polygons
146622
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
3.983, 4.563, 4.501
Centroid coordinates
35.805, 29.144, 19.891
Units of point coordinates
Mm
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
1
Number of processing events
2
(4 steps)
Derived directly from
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
AMNH Dept of Mammalogy
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1552848 (to DM Boyer)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
AMNH:Mammals:M-200525
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST
Device facility
Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2000
Voltage
120
Power
14.4
Amperage
120
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
with 3 activities
to create
derived
Media 000410491: Feet [CTImageSeries] [CT].
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Processing Activity 1: Reconstruction
Software
Description
Processing Activity 2: Crop
Software
Image J
Description
Processing Activity 3: Transform: Reflection
Software
Image J
Description
Media produced by this event on MorphoSource
STEP 3: IMAGE PROCESSING
Derived
Media 000410491: Feet [CTImageSeries] [CT]
was processed
with 1 activity
to create
derived
Media 000414454: Navicular [Mesh] [CT] (this media).
Processing Details Field Definitions
Creator
doug boyer
Event date
January 16, 2022
Software
avizo
Description
--
Description attachment
None
Processing Activity 1: Reconstructed Tomography to Mesh
Software
avizo
Description
constrained smoothing applied
Media produced by this event on MorphoSource
Media 000414454: Navicular [Mesh] [CT] (this media)