Media 000114921: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
frim:0026 Anomochilus leonardi
Managed by
Jessie Maisano

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Media produced from the same original imaging that created Media 000114921 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000114921
Media type
Volumetric Image Series
Object element or part
head
Object represented
frim:0026
Object taxonomy
Anomochilus leonardi
Object organization
Forest Research Institute Malaysia
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1095\\r\\n\\r\\nMaisano\\r\\nAnomochilus: Scans of the head of Anomochilus leonardi (FRIM 0026) for Dr. Jessie Maisano of The University of Texas at Austin and ATOL. Specimen scanned by Matthew Colbert 29 September 2004. Specimen shifted position during scanning. Poor image quality due to both small size of specimen and movement.\\r\\n\\r\\n16bit: 1024x1024 16-bit TIFF images. II, 180 kV, 0.088 mA, no filter, air wedge, no offset, slice thickness 2 lines (= 0.0144 mm), S.O.D. 21 mm, 1600 views, 4 samples per view, inter-slice spacing 2 lines (= 0.0144 mm), field of reconstruction 5.5 mm (maximum field of view 6.88 mm), reconstruction offset 10000, reconstruction scale 1500. Acquired with 15 slices per rotation. Spike removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routine “RK_SinoDeSpike”. Reconstructed offcenter with X=+1 and with C-ray offsets between -2 and -3.5, using a parameter file. Deleted slices 14 and 15, as these were duplicates. Total slices = 553.\\r\\n\\r\\n8bit: 8-bit version of the above images, with scans above #253 nudged by 5.5 pixels to correct for apparent specimen shift during scanning and rotated by -95.5 degrees, using Photoshop. Images nudged an additional 2 pixels for slices #269 and above.\\r\\n\\n\\nRelated URL: http://digimorph.org/specimens/Anomochilus_leonardi/ Migrated MorphoSource 1 Media Group Description: Related URL: http://digimorph.org/specimens/Anomochilus_leonardi/
Creator
--
Date created
--
Date uploaded
April 27, 2020

FILE OBJECT DETAILS Field Definitions

File name
8bit.zip
File format(s)
ZIP archive, TIFF
File size
179 MB
Image width
778
Image height
664
Color space
BlackIsZero
Color depth
8
Compression
--
X pixel spacing
0.005400
Y pixel spacing
0.005400
Z pixel spacing
0.014400
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
553

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Jessie Maisano
Publication status
Restricted Download
Download reviewer
Jessie Maisano
IP holder
Forest Research Institute Malaysia
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
EF-0334961, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: oUTCT provided access to these dataoriginally appearing in Gauthier et al., 2012, with data collection funded by NSF EF-0334961 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M114921
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object frim:0026 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
4
Projections
1600
Voltage
180
Power
--
Amperage
88
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000114921: Head [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000114921: Head [CTImageSeries] [Etc] (this media)