Media 000158883: Stained Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000158883
Media type
Volumetric Image Series
Object element or part
stained whole body
Object represented
Object taxonomy
Nothura maculosa
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive\\r\\n\\r\\nLi: \\r\\nN_maculosa_stained: Scan of an iodine-stained Northura maculosa (USNM 635813) for Zhiheng Li of The University of Texas. Specimen scanned by Matthew Colbert on 28 July 2016.\\r\\n\\r\\n16bitTIFF: Scan parameters: NSI scanner. Fein Focus High Power source, 180 kV, 0.17 mA, no filter, Perkin Elmer detector, 0.25 pF gain, 5 fps, 2x2 binning, no flip, source to object 275 mm, source to detector 1316.772 mm, helical continuous CT scan, vertical extent 242.5 mm, pitch 40.42 mm, 6 revolutions, 3 sets, 2 frames averaged, 0 skip frames, 9004 projections, 7 gain calibrations, 15 mm calibration phantom, data range [-2.0, 30.0] (grayscales adjusted from NSI defaults), beam-hardening correction = 0.15. Helical sigma changed to 80.8333506735569. Voxel size = 83.1 ?m. Total slices = 2413.
Creator
--
Date created
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Date uploaded
August 28, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
3.02 GB
Image width
921
Image height
853
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.083100
Y pixel spacing
0.083100
Z pixel spacing
0.083100
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
2,413

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Smithsonian Institution, National Museum of Natural History
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
Gordon and Betty Moore Foundation Grant 4498, NSF DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Julia Clarke and Zhiheng Li provided access to these data , with data collection funded by the Gordon and Betty Moore Foundation Grant 4498 and data upload to MorphoSource funded by NSF DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
--
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object USNM:BIRDS:USNM 635813 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.2
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
9004
Voltage
180
Power
--
Amperage
170
Surrounding material
0.25 pF gain
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
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Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000158883: Stained Whole Body [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000158883: Stained Whole Body [CTImageSeries] [Etc] (this media)