Media 000164538: Whole Fish Skeleton
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
l-ms:70111 Cottocomephorus grewingkii
Managed by
ADAM SUMMERS

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Media produced from the same original imaging that created Media 000164538 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000164538
Media type
Volumetric Image Series
Object element or part
Whole fish skeleton
Object represented
l-ms:70111
Object taxonomy
Cottocomephorus grewingkii
Object organization
Laboratory of Michael Sandel
Side
--
Orientation
--
Short description
CT Image Stack
Full description
Migrated MorphoSource 1 Media File Title: CT Image Stack Migrated MorphoSource 1 Media Group Title: Whole-body fish specimen Migrated MorphoSource 1 Media Group Description: Specimen standard length: 85.08mm
Creator
--
Date created
--
Date uploaded
October 08, 2020

FILE OBJECT DETAILS Field Definitions

File name
03_Cgrewingki_106827_TBGroup_078_Y.zip
File format(s)
ZIP archive, JPEG
File size
84.5 MB
Image width
1027
Image height
781
Color space
YCbCr
Color depth
8
Compression
JPEG
X pixel spacing
0.030002
Y pixel spacing
0.030002
Z pixel spacing
0.030002
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,658

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
ADAM SUMMERS
Data uploaded by
Thaddaeus Buser
Publication status
Open Download
Download reviewer
--
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
NSF 1557147 to Michael Sandel and NSF DEB-1557149 to Andres Aguilar; NSF DBI-1701665
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Thaddaeus Buser provided access to these dataoriginally appearing in Genomic and morphological data reveal evolutionary relationships in the benthopelagic endemic Lake Baikal genus Cottocomephorus with data collection funded by NSF grant 1557147 to Michael Sandel and NSF grant DEB-1557149 to Andres Aguilar.. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M164538
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object l-ms:70111 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173
Device facility
Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
Creator
Thaddaeus Buser, Adam Summers
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
--
Voltage
65
Power
--
Amperage
123
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000164538: Whole Fish Skeleton [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Thaddaeus Buser, Adam Summers
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000164538: Whole Fish Skeleton [CTImageSeries] [Etc] (this media)