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ABS database v 1.0
 
 

 

ENTRY: A0014
Collagen, type I, alpha 2

REFSEQ

-NM_000089 (human)
-NM_007743 (mouse)

PUBMED

- B. Lenhard, A. Sandelin, L. Mendoza, P. Engström, N. Jareborg and W.W. Wasserman.
"Identification of conserved regulatory elements by comparative genome analysis."
Journal of Biology 2:13 (2003).
[PMID: 12760745]


PROMOTER ANNOTATION

OrganismGenBank AccessionPromoter
Homo sapiensAF004877[500 bps]
SitePositionSequence
SP1171CCCATAGTGTTTCCAAACTTGGAAAGGGCGGGGGAGGGCGGGAGG
SP1188CTTGGAAAGGGCGGGGGAGGGCGGGAGG
CAAT415CCATT
TBP468TATAAA

Mus musculusNM_007743[500 bps]
SitePositionSequence
SP1118CCTAAAGTGCTTCCAAACTTGGCAAGGGCGAGAGAGGGCGGGTGG
SP1135CTTGGCAAGGGCGAGAGAGGGCGGGTGG
CAAT356CCATT
TBP409TATAAA


PREDICTIONS

JASPAR 0.85 0.70 0.85 0.70
PROMO 0.85 0.70 0.85 0.70
TRANSFAC 0.85 0.70 0.85 0.70


DOTPLOT



ALIGNMENTS INFORMATION

GLOBAL alignment
LOCAL alignment
AVID alignment
LAGAN alignment

 
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