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Acidilobus saccharovorans 345-15

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Study Name (Proposal Name) Acidilobus saccharovorans 345-15
Organism Name Acidilobus saccharovorans 345-15
Taxon ID 648028003
NCBI Taxon ID 666510
GOLD IDs in IMG Database Study ID: Gs0000219  Project ID: Gp0003977  Analysis ID: Ga0027283  
GOLD Analysis Project Type Genome Analysis (Isolate)
Submission Type Primary
JGI Analysis Project Type Genome Analysis (Isolate)
SRA ID n/a
SRA Run n/a
JGI Data Utilization Status Not subject to JGI Data Policy, sequenced elsewhere
Is Public Yes
External Links JGI Portal ; NCBI/RefSeq:NC_014374; NCBI/Taxonomy:666510; PUBMED:20581186
NCBI Taxonomy Lineage Archaea; Thermoproteota; Thermoprotei; Acidilobales; Acidilobaceae; Acidilobus; Acidilobus saccharovorans
GTDB-Tk Taxonomy Lineage Archaea; Thermoproteota; Thermoprotei_A; Sulfolobales; Acidilobaceae; Acidilobus; Acidilobus saccharovorans
CheckM2 Completeness 99.57
CheckM2 Contamination .34
Sequencing Status Finished
Sequencing Center Russian Academy of Science, Centre Bioengineering
High Quality Yes
Comment
Version Information  
Public Release Date 2011-01-01
Add Date 2010-10-29
Modified Date 2014-08-05
IMG Release/Pipeline Version IMG/W 3.3
IMG Annotation Version n/a
Project Information  
Biotic Relationships Free living
Cell Shape Coccus-shaped
Culture Type Isolate
Cultured Yes
Diseases None
Ecosystem Environmental
Ecosystem Category Aquatic
Ecosystem Subtype Unclassified
Ecosystem Type Thermal springs
GenBank Anomalous Assembly No
Geographic Location acidic hot springs of Kamchatka Peninsula
Gram Staining Gram-
Habitat Fresh water, Hot spring
Is Published Yes
Genome Publication open
Isolation solfataric field of Uzon caldera of Kamchatka Peninsula
Isolation Country Russia
Latitude 54.5
Longitude 159.96
Motility Nonmotile
NCBI Assembly Accession GCA_000144915.1
NCBI Bioproject Accession PRJNA39927
NCBI Biosample Accession SAMN02603091
NCBI GenBank ID CP001742
Oxygen Requirement Anaerobe
Phenotype Acidophile
Relevance Biotechnological
Sample Collection Temperature 80 C
Sequencing Quality Level 6: Finished
Sequencing Status Complete
Sequencing Strategy Whole Genome Sequencing
Specific Ecosystem Unclassified
Temperature Range Hyperthermophile
Type Strain Yes
pH 3.5-4
Project Geographical Map
Hint

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and set "Hide Zeroes in Genome Statistics" to "No".


Number % of Total
DNA, total number of bases 1496453 100.00%
        DNA coding number of bases 1356878 90.67%
        DNA G+C number of bases 856231 57.22% 1
                       
DNA scaffolds 1 100.00%
        CRISPR Count 7  
                       
Genes total number 1547 100.00%
        Protein coding genes 1499 96.90%
        RNA genes 48 3.10%
                rRNA genes 3 0.19%
                        5S rRNA 1 0.06%
                        16S rRNA 1 0.06%
                        23S rRNA 1 0.06%
                tRNA genes 45 2.91%
        Protein coding genes with function prediction 1053 68.07%
                without function prediction 446 28.83%
        Protein coding genes with enzymes 485 31.35%
        Protein coding genes connected to KEGG pathways3 543 35.10%
                not connected to KEGG pathways 956 61.80%
        Protein coding genes connected to KEGG Orthology (KO) 864 55.85%
                not connected to KEGG Orthology (KO) 635 41.05%
        Protein coding genes connected to MetaCyc pathways 431 27.86%
                not connected to MetaCyc pathways 1068 69.04%
        Protein coding genes with COGs3 979 63.28%
                with KOGs3 378 24.43%
                with Pfam3 1129 72.98%
                with TIGRfam3 361 23.34%
                in internal clusters 78 5.04%
        Protein coding genes coding signal peptides 15 0.97%
        Protein coding genes coding transmembrane proteins 326 21.07%
COG clusters 759 77.53%
KOG clusters 313 31.97%
Pfam clusters 955 84.59%
TIGRfam clusters 348 96.40%
Internal clusters 35  
Predicted Viruses Pending process
Predicted Plasmids Pending process

Notes:

1 - GC percentage shown as count of G's and C's divided by the total number of bases.
The total number of bases is not necessarily synonymous with a total number of G's, C's, A's, and T's.
2 - Pseudogenes may also be counted as protein coding or RNA genes, so is not additive under total gene count.
3 - Graphical view available.

Average Nucleotide Identity (ANI)

Species: Acidilobus saccharovorans
Total genomes of this same species: 1
This species is present in 1 cliques

Hint

Click on a cluster ID to view genomes in that clique, as well as a list of similar cliques.

Cluster ID
Cluster Type
Contributing Species
Genome Count
Bin Count
singleton
Acidilobus saccharovorans
0


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