Media 000370131: Isolated Sclerite Of Lepidocoleus
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Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000370131: Isolated Sclerite Of Lepidocoleus
Restricted Download
Type
Mesh
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
In Collections
TAGS
GENERAL DETAILS Field Definitions
Media ID
000370131
Media type
Mesh
Object element or part
Isolated sclerite of Lepidocoleus
Object represented
Object taxonomy
Lepidocoleus cf. kuangguoduni
Object organization
Side
Right
Orientation
--
Short description
Isolated sclerite of Lepidocoleus cf. kuangguoduni
Full description
Lepidocoleus cf. kuangguoduni sclerite (AM F.146580, horizon “WG/3-5”, Garra Formation) from right series
Creator
Sarah Jacquet
Date created
June 12, 2020
Date uploaded
July 12, 2021
FILE OBJECT DETAILS Field Definitions
File name
WG_1-5_R_AM_F146579.stl
File format(s)
STL
File size
635 KB
Points
6502
Polygons
13000
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
71.436, 141.582, 106.599
Centroid coordinates
3.321, 15.147, 30.003
Units of point coordinates
--
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
1
Number of processing events
1
(5 steps)
Derived directly from
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, Sydney Microscopy & Microanalysis (The University of Sydney)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
Papers in Palaeontology
Cite as
JACQUET, S. M., SELLY, T., SCHIFFBAUER, J. D. and BROCK, G. A. 2021. Project: Data from: Sclerite assembly, articulation, and protective system of Lower Devonian machaeridians. https://www.morphosource.org/Detail/ProjectDetail/Show/XXXXXX
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
am:paleontology:AM F. 146579
was imaged to create
raw
Media 000367584: Isolated Sclerite Of Lepidocoleus [CTImageSeries] [CT].
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400
Device facility
Sydney Microscopy & Microanalysis (The University of Sydney)
Creator
Matthew Foley
Event date
June 11, 2021
Software
Zeiss
Description
--
Description attachment
None
Reference attachment
None
Exposure time
5
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
1201
Voltage
45
Power
45
Amperage
--
Surrounding material
Gold-coated
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
No
Optical magnification
Yes
Acquisition type
Sequenced
Media produced by this event on MorphoSource
STEP 2: IMAGE PROCESSING
Raw
Media 000367584: Isolated Sclerite Of Lepidocoleus [CTImageSeries] [CT]
was processed
with 5 activities
to create
derived
Media 000370131: Isolated Sclerite Of Lepidocoleus [Mesh] [CT] (this media).
Processing Details Field Definitions
Creator
Sarah Jacquet
Event date
June 12, 2020
Software
Dragonfly ORS
Description
Isolated sclerite of Lepidocoleus cf. kuangguoduni; right series
Description attachment
None
Processing Activity 1: Reconstructed Tomography to Mesh
Software
Dragonfly ORS
Description
Import raw image sequence into Dragonfly ORS, segment the sclerite using threshold, export segmented ROI to Mesh
Processing Activity 2: Smoothing/Noise Reduction
Software
Dragonfly ORS
Description
Mesh was smoothed over 5 iterations in Dragonfly ORS
Processing Activity 3: Patch
Software
Autodesk Netfabb
Description
Holes in the mesh were patched.
Processing Activity 4: Simplification
Software
Autodesk Netfabb
Description
Mesh was simplified to reduce the number of triangles and overall size of the data.
Processing Activity 5: Transform: Rotation
Software
Autodesk Meshmixer
Description
Mesh was imported into Meshmixer to arrange in association with paired sclerites.
Media produced by this event on MorphoSource
Media 000370131: Isolated Sclerite Of Lepidocoleus [Mesh] [CT] (this media)